Molecular Biology Web Tools

American Society of Plant Biologists
Professional society devoted to the advancement of the plant sciences

Ammonium Sulfate Calculator
Computes the amount of solid ammonium sulfate required to reach a given percent saturation

Free plasmid editor software download

Arabidopsis Information Resource
Database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana

BioMath Calculators
Useful unit converstions

BLAST: Basic Local Alignment Search Tool
Protein and nucleotide sequence database alignment tool

Centrifugation Rotor Calculator
Interconverts RPM and RCF for common rotors

Cold Springs Harbor Protocols
Journal of laboratory protocols

Free cytometry data analysis software

DNA/RNA/Protein Molecular Weight Calculator

E. coli Statistics
Useful information on E. coli

Comprehensive proteomics toolbox

Finnzymes Tm Calculator
DNA melting temp calculator for Phusion PCR(nearest-neighbor method)

Gibson Calculator
Primer design for Gibson ligations (KT)

Hill Coefficient Calculator
Calculates Hill coefficient from tab-delineated data

Integrated Microbial Genomes
Comparatively analyze genome data  by gene, genome and function

Basic sequence alignment tool

Microbes On-line
Genome analysis tools

Sequence Alignment and Analysis (ClustalW)

RNA and DNA oligo properties

Online Analysis Tools
Various useful bioinformatics resources

Plasmid Databases
Links to various plasmid sequence resources

Protein Calculator
Protein Properties

Database of confirmed prokaryotic translation initiation sites

Random DNA Generator
Generates a random DNA sequence with defined GC content

RBS Generator
Source code

Restriction Mapper
Finds restriction sites in a DNA sequence

Signal peptide cleavage site predictor

Reverse Complement
Converts a DNA sequence into its reverse, complement, or reverse-complement counterpart

RNA and DNA folding algorithms

Thank you to the Voigt lab for beginning this compilation!